6O41
Crystal structure of the unbound PGZL1 germline Fab fragment (PGZL1_gVmDmJ)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 78.840, 107.490, 131.960 |
Unit cell angles | 90.00, 94.61, 90.00 |
Refinement procedure
Resolution | 39.670 - 2.465 |
R-factor | 0.1714 |
Rwork | 0.169 |
R-free | 0.21870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6o3d |
RMSD bond length | 0.005 |
RMSD bond angle | 0.820 |
Data reduction software | XDS (20180126) |
Data scaling software | XSCALE (20180126) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.670 | 2.530 |
High resolution limit [Å] | 2.465 | 2.465 |
Rpim | 0.062 | 0.597 |
Number of reflections | 77485 | 5460 |
<I/σ(I)> | 9.2 | |
Completeness [%] | 97.7 | 94 |
Redundancy | 3.5 | 3.4 |
CC(1/2) | 0.995 | 0.526 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 20% PEG3350, 0.2 M lithium citrate |