6O3K
Crystal structure of the unbound Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.358, 64.984, 68.005 |
Unit cell angles | 90.00, 105.81, 90.00 |
Refinement procedure
Resolution | 35.514 - 1.451 |
R-factor | 0.1577 |
Rwork | 0.156 |
R-free | 0.19110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6o3d |
RMSD bond length | 0.003 |
RMSD bond angle | 0.926 |
Data reduction software | HKL-2000 (2.3.10) |
Data scaling software | HKL-2000 (2.3.10) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.514 | 1.480 |
High resolution limit [Å] | 1.450 | 1.450 |
Rpim | 0.039 | 0.615 |
Number of reflections | 74084 | 2908 |
<I/σ(I)> | 10.1 | 1.1 |
Completeness [%] | 95.4 | 75.4 |
Redundancy | 2.8 | 1.7 |
CC(1/2) | 0.865 | 0.495 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | Reservoir: 30% PEG 2000 MME, 0.1 M sodium acetate pH 4.6, 0.2 M ammonium sulfate |