6NY5
Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-09 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 159.677, 159.677, 215.530 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.759 - 3.002 |
R-factor | 0.2146 |
Rwork | 0.211 |
R-free | 0.26340 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | AutoSol |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 8.130 | 3.000 |
Rmerge | 0.062 | 0.023 | 0.526 |
Rmeas | 0.066 | 0.025 | 0.562 |
Rpim | 0.023 | 0.009 | 0.197 |
Total number of observations | 226676 | ||
Number of reflections | 28120 | 1515 | 1376 |
<I/σ(I)> | 12.4 | ||
Completeness [%] | 99.9 | 98.1 | 100 |
Redundancy | 8.1 | 7.3 | 8.1 |
CC(1/2) | 0.999 | 0.960 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 1.4 M magnesium sulfate, 0.1 M MES |