6NMX
Threonine synthase from Bacillus subtilis ATCC 6633 with PLP and APPA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-07 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.532, 104.174, 125.573 |
Unit cell angles | 90.00, 99.56, 90.00 |
Refinement procedure
Resolution | 123.828 - 1.971 |
R-factor | 0.1613 |
Rwork | 0.159 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cgq |
RMSD bond length | 0.007 |
RMSD bond angle | 0.919 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER (2.7.12) |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 123.828 | 1.978 |
High resolution limit [Å] | 1.971 | 1.971 |
Rmerge | 0.129 | 0.744 |
Rmeas | 0.145 | 0.959 |
Rpim | 0.067 | 0.437 |
Total number of observations | 379109 | |
Number of reflections | 80962 | 903 |
<I/σ(I)> | 10.7 | |
Completeness [%] | 91.3 | 95.7 |
Redundancy | 4.7 | 4.7 |
CC(1/2) | 0.996 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 282.15 | 0.03 M MgCl2 hexahydrate, 0.03 M CaCl2 dihydrate, 18% v/v PEG 550 MME, 9% w/v PEG 20,000, 0.1 M MES/imidazole, pH 6.5 |