6NJA
Structure of WT RET protein tyrosine kinase domain at 1.92A resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 71.703, 70.816, 78.869 |
Unit cell angles | 90.00, 102.05, 90.00 |
Refinement procedure
Resolution | 39.310 - 1.920 |
R-factor | 0.18807 |
Rwork | 0.183 |
R-free | 0.23400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 2ivt |
RMSD bond length | 0.007 |
RMSD bond angle | 1.490 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | FFT |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.950 |
High resolution limit [Å] | 1.920 | 1.920 |
Rmerge | 0.041 | 0.614 |
Rmeas | 0.049 | 0.729 |
Rpim | 0.026 | 0.389 |
Number of reflections | 28781 | 1327 |
<I/σ(I)> | 25.32 | |
Completeness [%] | 97.2 | 90.5 |
Redundancy | 3.4 | 3.3 |
CC(1/2) | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 295 | 2.2-2.6M Na FORMATE, 0.1m Na CITRATE pH5.5 |