6NF0
Nocturnin with bound NADPH substrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-01 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.92 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 62.888, 62.888, 153.597 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.099 - 2.700 |
R-factor | 0.2092 |
Rwork | 0.206 |
R-free | 0.26400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mal |
RMSD bond length | 0.005 |
RMSD bond angle | 0.802 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.100 | 2.335 |
High resolution limit [Å] | 2.050 | 2.053 |
Rmerge | 0.118 | 1.471 |
Rmeas | 0.123 | 1.538 |
Rpim | 0.034 | 0.443 |
Number of reflections | 10499 | 580 |
<I/σ(I)> | 14.277 | |
Completeness [%] | 93.2 | 82.39 |
Redundancy | 12.65 | 11.88 |
CC(1/2) | 0.999 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | Co-crystals were grown using the hanging drop vapor diffusion method by mixing the crystallization complex 1:1 with reservoir solution (100 mM HEPES pH 7.5, 10% (v/v) Isopropanol, 50 mM Sodium Acetate, and 12% (w/v) PEG 4,000) |