6NEZ
Trypanosoma brucei - BDF5, Tb427tmp.01.5000 A, solved with PF-CBP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 58.994, 151.493, 156.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.940 - 2.200 |
R-factor | 0.2058 |
Rwork | 0.204 |
R-free | 0.24580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k29 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.492 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.099 | 0.043 | 0.981 |
Rmeas | 0.106 | 0.047 | 1.048 |
Rpim | 0.037 | 0.017 | 0.359 |
Total number of observations | 286191 | ||
Number of reflections | 35904 | 1937 | 1743 |
<I/σ(I)> | 6.3 | ||
Completeness [%] | 99.6 | 99 | 99.8 |
Redundancy | 8 | 7.6 | 7.7 |
CC(1/2) | 0.997 | 0.688 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 2.27 M Na Formate, and 0.1M Na Acetate pH4.5 |