6N9Q
Structure of the Quorum Quenching lactonase from Parageobacillus caldoxylosilyticus bind to substrate C4-AHL
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033200 |
Spacegroup name | H 3 |
Unit cell lengths | 108.020, 108.020, 222.140 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.740 - 2.350 |
R-factor | 0.16846 |
Rwork | 0.166 |
R-free | 0.21093 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6n9i |
RMSD bond length | 0.002 |
RMSD bond angle | 0.567 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.740 | 2.450 |
High resolution limit [Å] | 2.350 | 2.350 |
Number of reflections | 39818 | |
<I/σ(I)> | 12.41 | |
Completeness [%] | 98.9 | |
Redundancy | 7.35 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | Concentrated protein samples 10mg.mL-1, ammonium sulfate 1 to 2.25M, 0.1M sodium acetate. Soaking in 20 mM of 3-oxo-C12 AHL for 5 min. Diffraction quality crystals appeared after 1 d at 292 K. |