6N6P
Crystal structure of [FeFe]-hydrogenase in the presence of 7 mM Sodium dithionite
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 112.021, 112.021, 103.772 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.605 - 1.950 |
R-factor | 0.158 |
Rwork | 0.155 |
R-free | 0.20380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3c8y |
RMSD bond length | 0.004 |
RMSD bond angle | 0.617 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHENIX (Phaser 2.8.0) |
Refinement software | PHENIX (1.13rc2_2986) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.610 | 2.000 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.141 | 0.462 |
Rpim | 0.041 | 0.150 |
Number of reflections | 48714 | 3399 |
<I/σ(I)> | 16 | 5.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 23.6 | 19 |
CC(1/2) | 0.998 | 0.984 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 298 | 25% PEG 4000, 0.1 M Sodium acetate (pH 4.6), 0.1 M Sodium sulfate, capillary diffusion. Crystals were treated with 7 mM Sodium sulfite prior freezing |