6N1S
Toxoplasma gondii TS-DHFR in complex with selective inhibitor 29
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979150 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.689, 145.522, 175.922 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.600 - 3.000 |
R-factor | 0.2086 |
Rwork | 0.207 |
R-free | 0.24150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4eil |
RMSD bond length | 0.010 |
RMSD bond angle | 1.372 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.110 |
High resolution limit [Å] | 3.000 | 6.460 | 3.000 |
Rmerge | 0.147 | 0.086 | 0.452 |
Rmeas | 0.165 | 0.097 | 0.510 |
Rpim | 0.072 | 0.043 | 0.228 |
Number of reflections | 25031 | 2444 | 2508 |
<I/σ(I)> | 7.1 | ||
Completeness [%] | 87.8 | 79.4 | 90.7 |
Redundancy | 4.9 | 5.1 | 4.8 |
CC(1/2) | 0.983 | 0.765 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.3 | 293 | Compound 29, NADPH, PDDF, and dUMP were combined with protein and then mixed with 0.1 M potassium formate buffer with 16% PEG3350 |