6MYE
Crystal structure of human Scribble PDZ1 domain in complex with internal PDZ binding motif of Src homology 3 domain-containing guanine nucleotide exchange factor (SGEF)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-08-13 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.0003 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 67.890, 67.890, 44.150 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.005 - 1.100 |
R-factor | 0.1983 |
Rwork | 0.198 |
R-free | 0.20450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w4f |
RMSD bond length | 0.005 |
RMSD bond angle | 0.901 |
Data reduction software | XDS |
Data scaling software | pointless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.010 | 1.160 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.052 | 0.448 |
Rpim | 0.409 | |
Number of reflections | 42446 | |
<I/σ(I)> | 26.7 | 1.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 15.6 | 12.8 |
CC(1/2) | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 60% (v/v) Tacsimate pH7.0 |