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6MVS

Structure of a bacterial ALDH16 complexed with NAD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2017-11-02
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9791
Spacegroup nameP 21 21 2
Unit cell lengths79.046, 158.970, 62.440
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution70.779 - 1.650
R-factor0.1701
Rwork0.169
R-free0.20000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)homology model built with Swiss-Model using 5kf6 as the template
Data reduction softwareXDS
Data scaling softwareAimless (0.7.2)
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]79.4801.680
High resolution limit [Å]1.6501.650
Rmerge0.1170.757
Rmeas0.1290.950
Rpim0.0520.564
Number of reflections921823411
<I/σ(I)>10
Completeness [%]96.873.7
Redundancy62.3
CC(1/2)0.9930.471
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5293Protein was concentrated to 6 mg/ml in a storage buffer consisting of 20 mM Tris-HCl at pH 8.0, 100 mM NaCl, 2.5% glycerol and 0.5 mM TCEP. The crystallization reservoir solution contained 20% (w/v) polyethylene glycol (PEG) 3350, 200 mM ammonium sulfate and 100 mM Bis-Tris at pH 5.5.

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PDB entries from 2024-05-15

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