6MP8
X-ray crystal structure of VioC bound to Fe(II), D-arginine, and 2-oxoglutarate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-15 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 79.957, 67.039, 62.130 |
Unit cell angles | 90.00, 108.15, 90.00 |
Refinement procedure
Resolution | 59.040 - 1.890 |
R-factor | 0.222 |
Rwork | 0.220 |
R-free | 0.25620 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.993 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.040 | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.160 | 1.900 |
Rmerge | 0.066 | 0.032 | 0.491 |
Rmeas | 0.078 | 0.038 | 0.577 |
Rpim | 0.040 | 0.020 | 0.300 |
Total number of observations | 86472 | ||
Number of reflections | 23222 | 1196 | 1087 |
<I/σ(I)> | 8.6 | ||
Completeness [%] | 93.7 | 93.4 | 85.4 |
Redundancy | 3.7 | 3.5 | 3.7 |
CC(1/2) | 0.997 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8.5 | 293 | 2-oxoglutarate, TRIS-HCl |