6MJG
Structure of dbOphMA in Complex with SAH and Methylated Peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-28 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97872 A |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 106.408, 107.975, 79.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.123 |
R-factor | 0.18833 |
Rwork | 0.186 |
R-free | 0.22701 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.529 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | SHELXS |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.790 | 2.160 |
High resolution limit [Å] | 2.123 | 2.123 |
Rmerge | 0.061 | 0.639 |
Rmeas | 0.072 | 0.783 |
Rpim | 0.037 | 0.444 |
Number of reflections | 25211 | 1166 |
<I/σ(I)> | 20.3 | 2.1 |
Completeness [%] | 96.2 | 88.5 |
Redundancy | 7 | 5.2 |
CC(1/2) | 0.999 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 282.15 | 2 mM SAH mixed 0.24 or 0.26 M NaF, 26% PEG3350, and 0.1 M Bis-tris propane at pH 6.5 |