6M61
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) with inhibitor heptelidic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-23 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.358, 135.078, 146.227 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.032 - 1.824 |
R-factor | 0.193381921753 |
Rwork | 0.192 |
R-free | 0.22789 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1u8f |
RMSD bond length | 0.006 |
RMSD bond angle | 0.877 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.860 |
High resolution limit [Å] | 1.820 | 1.830 |
Rmerge | 0.111 | 0.866 |
Number of reflections | 142957 | 142957 |
<I/σ(I)> | 25.5 | |
Completeness [%] | 99.9 | |
Redundancy | 10.2 | |
CC(1/2) | 0.751 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 289.15 | 0.1 M zinc acetate dihydrate, 0.1 M Sodium acetate trihydrate, pH 4.6, 12% w/v polyethylene glycol (PEG) 4000 |