Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6LSD

Crystal Structure of YEATS domain of human YEATS2 in complex with H3K27bz peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-29
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9792
Spacegroup nameP 4 2 2
Unit cell lengths89.674, 89.674, 86.943
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.840 - 2.050
R-factor0.1942
Rwork0.191
R-free0.23370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5iql
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.090
High resolution limit [Å]2.0505.5602.050
Rmerge0.0780.0340.787
Rmeas0.0820.0360.835
Rpim0.0260.0120.274
Total number of observations220973
Number of reflections2292712961132
<I/σ(I)>6.3
Completeness [%]100.0100100
Redundancy9.68.59.1
CC(1/2)0.9990.889
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP92910.1 M Bis-Tris, pH 9.0, 2.0M ammonium sulfate

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon