6LSD
Crystal Structure of YEATS domain of human YEATS2 in complex with H3K27bz peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 4 2 2 |
Unit cell lengths | 89.674, 89.674, 86.943 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.840 - 2.050 |
R-factor | 0.1942 |
Rwork | 0.191 |
R-free | 0.23370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iql |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.090 |
High resolution limit [Å] | 2.050 | 5.560 | 2.050 |
Rmerge | 0.078 | 0.034 | 0.787 |
Rmeas | 0.082 | 0.036 | 0.835 |
Rpim | 0.026 | 0.012 | 0.274 |
Total number of observations | 220973 | ||
Number of reflections | 22927 | 1296 | 1132 |
<I/σ(I)> | 6.3 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 9.6 | 8.5 | 9.1 |
CC(1/2) | 0.999 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 291 | 0.1 M Bis-Tris, pH 9.0, 2.0M ammonium sulfate |