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6LPG

human VASH1-SVBP complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-10
DetectorDECTRIS EIGER2 X 4M
Wavelength(s)1.1
Spacegroup nameP 61 2 2
Unit cell lengths71.854, 71.854, 215.811
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.060 - 2.300
R-factor0.1942
Rwork0.190
R-free0.23620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6nvq
RMSD bond length0.007
RMSD bond angle0.851
Data reduction softwareXDS
Data scaling softwarepointless
Phasing softwarePHASER
Refinement softwarePHENIX (1.17_3644)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.0602.382
High resolution limit [Å]2.3002.300
Rmerge0.0160.243
Rmeas0.0230.344
Rpim0.0160.243
Number of reflections154881492
<I/σ(I)>24.052.59
Completeness [%]99.9
Redundancy2
CC(1/2)1.0000.860
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.16 M ammonium sulfate, 0.08 M Sodium acetate pH4.6, 20%(w/v) PEG4000, 20%(v/v) glycerol

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