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6LPA

The nsp1 protein of a new porcine coronavirus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeFREE ELECTRON LASER
Source detailsEUROPEAN XFEL BEAMLINE FXE
Synchrotron siteEuropean XFEL
BeamlineFXE
Temperature [K]80
Detector technologyCCD
Collection date2019-06-23
DetectorADSC QUANTUM 315r
Wavelength(s)0.97918
Spacegroup nameP 21 21 21
Unit cell lengths54.831, 60.371, 84.005
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.188 - 2.105
R-factor0.2363
Rwork0.235
R-free0.25290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5xbc
Data scaling softwareHKL-2000
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0004.5202.180
High resolution limit [Å]2.1003.5902.100
Rmerge0.0910.0760.947
Rmeas0.0950.0790.985
Rpim0.0260.0220.268
Total number of observations216291
Number of reflections1674617121641
<I/σ(I)>4.6
Completeness [%]100.0100100
Redundancy12.91313.2
CC(1/2)0.9980.840
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION293PEG 3350, ammonium citrate dibasic

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PDB entries from 2024-05-15

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