6LF4
Crystal structure of VMB-1 bound to hydrolyzed meropenem
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979191 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.108, 96.777, 131.716 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 77.990 - 2.010 |
R-factor | 0.2118 |
Rwork | 0.209 |
R-free | 0.25690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jv4 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.680 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.990 | 2.120 |
High resolution limit [Å] | 2.008 | 2.010 |
Number of reflections | 63155 | 9088 |
<I/σ(I)> | 4.8 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.3 | 13.8 |
CC(1/2) | 0.920 | 0.870 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.2 M Ammonium sulfate, 0.1M Bis-Tris pH 5.5, 25% PEG 3350 |