6LDX
Structure antibody E6 in complex with methylated peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-16 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 82.329, 82.329, 120.269 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.940 - 1.800 |
R-factor | 0.1713 |
Rwork | 0.169 |
R-free | 0.21730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ldv |
RMSD bond length | 0.014 |
RMSD bond angle | 1.857 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.940 | 1.900 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.092 | 0.468 |
Rpim | 0.019 | 0.131 |
Number of reflections | 39032 | 5534 |
<I/σ(I)> | 23.3 | 5.6 |
Completeness [%] | 99.9 | 99.1 |
Redundancy | 23.2 | 13.5 |
CC(1/2) | 0.999 | 0.875 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.1 M potassium chloride 24% PEG3350 |