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6L2M

The structure of the tRNA-specific deaminase mutant from M. capricolum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-08
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.979
Spacegroup nameP 32 2 1
Unit cell lengths55.589, 55.589, 109.227
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.141 - 2.303
R-factor0.201104412273
Rwork0.198
R-free0.25141
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6l2l
RMSD bond length0.007
RMSD bond angle0.813
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.380
High resolution limit [Å]2.3002.300
Rmerge0.1050.510
Number of reflections9158889
<I/σ(I)>38.54.8
Completeness [%]100.0100
Redundancy18.718.1
CC(1/2)0.9900.969
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62771.4M ammonium sulfate, 0.1M Sodium citrate pH 6.0

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PDB entries from 2024-05-15

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