6KYI
Rice Rubisco in complex with sulfate ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-30 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 |
Unit cell lengths | 110.061, 110.061, 199.748 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.030 - 1.750 |
R-factor | 0.1369 |
Rwork | 0.129 |
R-free | 0.14330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3axm |
RMSD bond length | 0.003 |
RMSD bond angle | 0.601 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.030 | 1.813 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.104 | 0.887 |
Rmeas | 0.107 | 0.927 |
Rpim | 0.028 | 0.266 |
Number of reflections | 118922 | 11805 |
<I/σ(I)> | 23.31 | 2.85 |
Completeness [%] | 99.9 | 99.26 |
Redundancy | 14.9 | 11.7 |
CC(1/2) | 0.999 | 0.721 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.1 M Tris-HCl (pH 9.0), 0.2 M lithium sulfate, 15 % (w/v) polyethylene glycol 4000, and 10 % (w/v) glycerol |