6KKK
Crystal structure of Drug:Proton Antiporter-1 (DHA1) Family SotB, in the inward open conformation (H115A mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 261.618, 61.822, 122.463 |
Unit cell angles | 90.00, 93.42, 90.00 |
Refinement procedure
Resolution | 47.176 - 3.500 |
R-factor | 0.234 |
Rwork | 0.231 |
R-free | 0.26740 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.630 |
High resolution limit [Å] | 3.485 | 7.530 | 3.500 |
Rmerge | 0.185 | 0.058 | 0.604 |
Rmeas | 0.210 | 0.065 | 0.703 |
Rpim | 0.098 | 0.029 | 0.352 |
Number of reflections | 25106 | 2630 | 2466 |
<I/σ(I)> | 4.2 | ||
Completeness [%] | 98.9 | 99.3 | 97.9 |
Redundancy | 4.4 | 5.2 | 3.7 |
CC(1/2) | 0.995 | 0.450 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 297 | 30% PEG 400, 0.1 M Sodium chloride, 0.1 M Lithium sulfate, 0.1 M Sodium citrate tribasic dihydrate pH 5 |