Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6KFD

Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis, complexed with iodoacetate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-24
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.1
Spacegroup nameP 61 2 2
Unit cell lengths58.091, 58.091, 225.456
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.310 - 1.550
R-factor0.16545
Rwork0.165
R-free0.17891
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6kfa
RMSD bond length0.007
RMSD bond angle1.275
Data reduction softwareXDS (0.48)
Data scaling softwareSCALA (3.3.22)
Phasing softwareMOLREP (11.2.08)
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.3101.630
High resolution limit [Å]1.5501.550
Rmerge0.0660.624
Rmeas0.0690.663
Rpim0.0220.223
Number of reflections340294822
<I/σ(I)>25.14.2
Completeness [%]100.0100
Redundancy17.916.6
CC(1/2)1.0000.956
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP52930.2 M ammonium sulfate, 0.1 M sodium acetate (pH 5.0), 28-32% (w/v) PEG monomethyl ether 2000, 0.3 M NDSB-195

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon