6K7P
Crystal structure of human AFF4-THD domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 41.411, 79.762, 185.667 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.417 - 2.400 |
R-factor | 0.2191 |
Rwork | 0.214 |
R-free | 0.26760 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.043 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SHELX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.490 |
High resolution limit [Å] | 2.399 | 5.170 | 2.400 |
Rmerge | 0.085 | 0.065 | 0.535 |
Rmeas | 0.087 | 0.067 | 0.551 |
Rpim | 0.020 | 0.016 | 0.133 |
Number of reflections | 12455 | 1346 | 1172 |
<I/σ(I)> | 6.3 | ||
Completeness [%] | 99.6 | 99.9 | 96.2 |
Redundancy | 19 | 18.3 | 15.9 |
CC(1/2) | 0.998 | 0.975 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 4.5 | 291 | 0.3 M sodium citrate, 0.1 M sodium citrate-citrate acid pH 4.5, 25% PEG 3350 |