6JXD
Human nucleosome core particle with cohesive end DNA termini
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 98.15 |
Detector technology | PIXEL |
Collection date | 2017-09-18 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.310, 109.660, 183.819 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 92.080 - 2.250 |
R-factor | 0.23975 |
Rwork | 0.239 |
R-free | 0.29225 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2nzd |
RMSD bond length | 0.007 |
RMSD bond angle | 1.496 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.180 | 2.370 |
High resolution limit [Å] | 2.250 | 2.250 |
Rpim | 0.030 | 0.760 |
Number of reflections | 101214 | 14272 |
<I/σ(I)> | 12.2 | |
Completeness [%] | 99.7 | |
Redundancy | 11.5 | |
CC(1/2) | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291.15 | manganese chloride, potassium chloride, potassium cacodylate |