6JQF
Crystallization analysis of a beta-N-acetylhexosaminidase (Am2136) from Akkermansia muciniphila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 108.819, 114.548, 128.073 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.720 - 1.900 |
R-factor | 0.1604 |
Rwork | 0.159 |
R-free | 0.18920 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | MoRDa |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.660 |
High resolution limit [Å] | 1.600 | 3.450 | 1.600 |
Rmerge | 0.128 | 0.098 | 1.099 |
Rmeas | 0.133 | 0.103 | 1.148 |
Rpim | 0.038 | 0.029 | 0.331 |
Number of reflections | 62210 | 10652 | 10338 |
<I/σ(I)> | 8.9 | ||
Completeness [%] | 99.8 | 98.8 | 100 |
Redundancy | 12.2 | 12.5 | 11.9 |
CC(1/2) | 0.992 | 0.885 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 0.2 M magnesium chloride hexahydrate, 0.1 M HEPES pH 7.5; 25% PEG3350 |