6JMP
Crystal Structure of a Non-hemolytic Pneumolysin from Streptococcus pneumoniae strain ST306
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-29 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.95372 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.480, 84.730, 214.620 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.290 - 2.200 |
R-factor | 0.226 |
Rwork | 0.224 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cr6 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.354 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.290 | 2.250 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.240 | 1.318 |
Number of reflections | 23881 | 7414 |
<I/σ(I)> | 10.56 | 2.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 11.7 | 12.1 |
CC(1/2) | 0.996 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 6 MM PHOSPHOCHOLINE, 0.2 M MGCL2, 20% PEG 3350 |