6JEB
crystal structure of a beta-N-acetylhexosaminidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 91.342, 91.342, 274.807 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.312 - 1.498 |
R-factor | 0.1139 |
Rwork | 0.113 |
R-free | 0.14120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rcn |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | MoRDa |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.550 |
High resolution limit [Å] | 1.500 | 3.230 | 1.500 |
Rmerge | 0.083 | 0.031 | 1.048 |
Rmeas | 0.084 | 0.032 | 1.066 |
Rpim | 0.016 | 0.007 | 0.194 |
Total number of observations | 3007998 | ||
Number of reflections | 109396 | 11684 | 10727 |
<I/σ(I)> | 7.5 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 27.5 | 21.3 | 29.7 |
CC(1/2) | 1.000 | 0.909 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 1.1M Sodium malonate, pH 7.0; 0.1 M HEPES pH 7.0; 0.5%v/v Jeffamine ED-2001 pH 7.0. |