6J9Q
Crystal structure of Trypanosoma brucei gambiense glycerol kinase complex with AMP-PNP.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 62.598, 123.149, 154.223 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.880 - 2.700 |
R-factor | 0.19492 |
Rwork | 0.191 |
R-free | 0.26934 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wxl |
RMSD bond length | 0.009 |
RMSD bond angle | 1.445 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.860 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.054 | 0.448 |
Rpim | 0.068 | |
Number of reflections | 62097 | 20049 |
<I/σ(I)> | 12.5 | 2 |
Completeness [%] | 98.4 | 98 |
Redundancy | 2.7 | 2.7 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 8-18% PEG 400, 0.1M HEPES, 11% 1,6-HEXANEDIOL |