6IWI
Crystal structure of PDE5A in complex with a novel inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 74.748, 74.748, 132.020 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.393 - 2.155 |
R-factor | 0.1874 |
Rwork | 0.185 |
R-free | 0.22650 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.435 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.6.1) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.190 |
High resolution limit [Å] | 2.150 | 5.830 | 2.150 |
Rmerge | 0.130 | 0.060 | 2.303 |
Rmeas | 0.134 | 0.062 | 2.371 |
Rpim | 0.031 | 0.015 | 0.560 |
Total number of observations | 449327 | ||
Number of reflections | 23729 | 1308 | 1200 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 100.0 | 99.5 | 99.9 |
Redundancy | 18.9 | 17.4 | 17.5 |
CC(1/2) | 0.998 | 0.754 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1 M Tris-HCl, 0.2 M MgSO4, 20% PEG 3350 |