6IU3
Crystal structure of iron transporter VIT1 with zinc ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-26 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 46.900, 290.240, 45.860 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.373 - 2.700 |
R-factor | 0.2796 |
Rwork | 0.277 |
R-free | 0.30500 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHARP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.375 | 48.383 | 2.797 |
High resolution limit [Å] | 2.700 | 5.814 | 2.700 |
Rmerge | 0.113 | 0.058 | 1.378 |
Total number of observations | 115869 | ||
Number of reflections | 16510 | 993 | 873 |
<I/σ(I)> | 14.5139 | 41.4791 | 1.6334 |
Completeness [%] | 99.6 | ||
Redundancy | 12.782 | 13.0866 | 13.4387 |
CC(1/2) | 0.998 | 0.996 | 0.898 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 7 | 293 | 24-26% PEG 500DME, 0.1 M HEPES pH7.0, 0.25-30 M ammonium sulfate, 0.0004 M zinc cloride, 0.2 M sodium fluoride |