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6IOY

Crystal structure of Porphyromonas gingivalis acetate kinase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE AR-NE3A
Synchrotron sitePhoton Factory
BeamlineAR-NE3A
Temperature [K]95
Detector technologyPIXEL
Collection date2017-11-18
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths82.770, 98.472, 102.769
Unit cell angles90.00, 91.64, 90.00
Refinement procedure
Resolution53.400 - 1.940
R-factor0.1907
Rwork0.189
R-free0.21942
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2iir
RMSD bond length0.011
RMSD bond angle1.370
Data reduction softwareDIALS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0230)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]53.4001.970
High resolution limit [Å]1.9401.940
Rmerge0.0930.240
Number of reflections1209525602
<I/σ(I)>11.95.78
Completeness [%]99.392.2
Redundancy6.56.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M lithium sulfate monohydrate, 0.1 M Tris/HCl (pH 8.5), and 24% (w/v) PEG 3350

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