6IJE
Crystal structure of the type VI amidase immunity (Tai4) from Agrobacterium tumefaciens
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL41XU |
| Synchrotron site | SPring-8 |
| Beamline | BL41XU |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-05-19 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 1.0000 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 53.921, 57.756, 71.465 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 44.960 - 1.550 |
| R-factor | 0.1753 |
| Rwork | 0.174 |
| R-free | 0.19750 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3zfi |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.794 |
| Data reduction software | DIALS |
| Data scaling software | Aimless (0.5.27) |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 53.920 | 53.920 | 1.580 |
| High resolution limit [Å] | 1.550 | 8.490 | 1.550 |
| Rmerge | 0.067 | 0.047 | 0.568 |
| Rmeas | 0.073 | 0.052 | 0.654 |
| Rpim | 0.029 | 0.021 | 0.313 |
| Total number of observations | 203509 | ||
| Number of reflections | 32919 | 255 | 1509 |
| <I/σ(I)> | 13 | ||
| Completeness [%] | 99.5 | 99.7 | 94.7 |
| Redundancy | 6.2 | 5.9 | 4.2 |
| CC(1/2) | 0.998 | 0.998 | 0.807 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 33 % PEG 6000, 1.5 M lithium chloride, 100 mM sodium acetate |
