6IC8
Crystal structure of the SPOC domain of human PHF3 in complex with RNA polymerase II CTD diheptapeptide phosphorylated on Ser2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-16 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.97890 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.069, 68.019, 99.165 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.471 - 1.929 |
R-factor | 0.1861 |
Rwork | 0.184 |
R-free | 0.22650 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.949 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_3150: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.471 | 1.998 |
High resolution limit [Å] | 1.929 | 1.929 |
Rmerge | 0.072 | 1.305 |
Rmeas | 0.078 | 1.444 |
Rpim | 0.031 | 0.603 |
Number of reflections | 27007 | 1970 |
<I/σ(I)> | 12.9 | 0.96 |
Completeness [%] | 95.6 | 70.6 |
Redundancy | 6.2 | 5.2 |
CC(1/2) | 0.999 | 0.383 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295.15 | 0.12 M ethylene glycol mixture, 0.1 M Tris-Bicine buffer pH 8.5, 20% glycerol, 10% PEG4000 |