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6I2G

ALFA-tag binding nanobody (NbALFA) bound to ALFA-tag peptide.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]77
Detector technologyPIXEL
Collection date2018-04-06
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.92
Spacegroup nameC 1 2 1
Unit cell lengths101.245, 32.379, 64.735
Unit cell angles90.00, 147.22, 90.00
Refinement procedure
Resolution50.330 - 1.500
R-factor0.1669
Rwork0.165
R-free0.19978
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5vnv
RMSD bond length0.013
RMSD bond angle1.857
Data reduction softwareDIALS
Data scaling softwareDIALS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.3601.540
High resolution limit [Å]1.5001.500
Number of reflections17571
<I/σ(I)>12.7
Completeness [%]95.2
Redundancy5.6
CC(1/2)0.997
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP294Crystal grew in a drop containing 100 nl of 100mM sodium citrate pH6.0, 2M ammonium sulphate, 4% v/v tert-Butanol, and 100 nl of the peptide-bound protein (10.1mg/ml NbALFA-ALFA peptide complex, 20mM HEPES pH7.4, 100mM NaCl, 10% glycerol).

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PDB entries from 2024-05-15

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