6HSJ
Crystal structure of the zebrafish peroxisomal SCP2-thiolase (type-1) in complex with CoA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-16 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9174 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 132.960, 80.880, 96.470 |
Unit cell angles | 90.00, 126.29, 90.00 |
Refinement procedure
Resolution | 47.590 - 1.460 |
R-factor | 0.15736 |
Rwork | 0.156 |
R-free | 0.17423 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6hrv |
RMSD bond length | 0.009 |
RMSD bond angle | 1.589 |
Data reduction software | XDS (November 3, 2014) |
Data scaling software | XSCALE (November 3, 2014) |
Phasing software | REFMAC (5.8.0232) |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.590 | 1.560 |
High resolution limit [Å] | 1.460 | 1.460 |
Rmerge | 0.110 | 0.680 |
Rpim | 0.040 | 0.190 |
Number of reflections | 140415 | 25212 |
<I/σ(I)> | 13.7 | 2.85 |
Completeness [%] | 98.2 | 98.2 |
Redundancy | 7.5 | 7.5 |
CC(1/2) | 0.998 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 100 mM HEPES, pH 7.0, 15 % PEG3350, 250 mM sodium acetate |