Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HRV

Crystal structure of the zebrafish peroxisomal SCP2-thiolase (type-1)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2013-05-16
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97625
Spacegroup nameC 1 2 1
Unit cell lengths133.160, 81.940, 96.810
Unit cell angles90.00, 125.81, 90.00
Refinement procedure
Resolution29.640 - 1.950
R-factor0.17131
Rwork0.169
R-free0.20702
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3zbg
RMSD bond length0.012
RMSD bond angle1.498
Data reduction softwareXDS (July 4, 2012)
Data scaling softwareXSCALE (November 3, 2014)
Phasing softwarePHASER (2.5.1)
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.6402.050
High resolution limit [Å]1.9501.950
Rpim0.0300.220
Number of reflections607998507
<I/σ(I)>15.72.94
Completeness [%]98.499.3
Redundancy3.43.4
CC(1/2)0.9900.870
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.4295100 mM HEPES, pH 6.4, 18% PEG3350, 250 mM sodium acetate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon