6HRV
Crystal structure of the zebrafish peroxisomal SCP2-thiolase (type-1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-05-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 133.160, 81.940, 96.810 |
Unit cell angles | 90.00, 125.81, 90.00 |
Refinement procedure
Resolution | 29.640 - 1.950 |
R-factor | 0.17131 |
Rwork | 0.169 |
R-free | 0.20702 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zbg |
RMSD bond length | 0.012 |
RMSD bond angle | 1.498 |
Data reduction software | XDS (July 4, 2012) |
Data scaling software | XSCALE (November 3, 2014) |
Phasing software | PHASER (2.5.1) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.640 | 2.050 |
High resolution limit [Å] | 1.950 | 1.950 |
Rpim | 0.030 | 0.220 |
Number of reflections | 60799 | 8507 |
<I/σ(I)> | 15.7 | 2.94 |
Completeness [%] | 98.4 | 99.3 |
Redundancy | 3.4 | 3.4 |
CC(1/2) | 0.990 | 0.870 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.4 | 295 | 100 mM HEPES, pH 6.4, 18% PEG3350, 250 mM sodium acetate |