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6HE3

Pseudomonas aeruginosa Seryl-tRNA Synthetase in Complex with 5'-O-(N-(L-seryl)-sulfamoyl)cytidine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-17
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.972422
Spacegroup nameC 1 2 1
Unit cell lengths151.006, 122.183, 65.489
Unit cell angles90.00, 114.67, 90.00
Refinement procedure
Resolution43.200 - 2.160
R-factor0.188
Rwork0.187
R-free0.21500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Model generated using 2DQ3 as a template
RMSD bond length0.010
RMSD bond angle1.070
Data reduction softwareXDS
Data scaling softwareAimless (0.6.2)
Phasing softwarePHASER (1.13-2998)
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]91.25091.2502.210
High resolution limit [Å]2.1006.6302.100
Rmerge0.0560.0300.605
Rmeas0.0670.0360.713
Rpim0.0360.0190.374
Total number of observations214186
Number of reflections6273820359170
<I/σ(I)>11.7
Completeness [%]99.399.199.5
Redundancy3.43.33.5
CC(1/2)0.9980.9980.752
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8293Holo protein, concentrated to 10 mg/mL in 10 mM Tris pH 7, 100 mM NaCl, 5mM DTT, was mixed with an equal volume of 100 mM Tris pH 8, 200 mM NaCl, 23% w/v PEG 3350 and 5% v/v ethylene glycol. Suitable crystals were soaked with 2 mM 5'-O-(N-(L-seryl)-sulfamoyl)N3-cytidine in a solution similar to the crystallization condition but containing 22% v/v ethylene glycol.

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PDB entries from 2024-05-15

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