6H70
GI.1 human norovirus protruding domain in complex with Nano-62 and 2-fucosyllactose (2FL)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976250 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 172.170, 89.210, 62.150 |
Unit cell angles | 90.00, 106.92, 90.00 |
Refinement procedure
Resolution | 46.760 - 1.830 |
R-factor | 0.1632 |
Rwork | 0.162 |
R-free | 0.19140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zl5 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.855 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.760 | 1.890 |
High resolution limit [Å] | 1.830 | 1.830 |
Rmerge | 0.050 | 0.423 |
Rmeas | 0.061 | 0.518 |
Rpim | 0.035 | 0.294 |
Number of reflections | 76837 | 7591 |
<I/σ(I)> | 12.27 | 1.99 |
Completeness [%] | 96.7 | 96.33 |
Redundancy | 2.6 | 2.6 |
CC(1/2) | 0.998 | 0.809 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M sodium citrate (pH 5.5) and 20% (w/v) PEG3000 |