Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GWF

Alpha-galactosidase mutant D387A from Thermotoga maritima in complex with intact cyclohexene-based carbasugar mimic of galactose with 2,4-dinitro leaving group

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]80
Detector technologyPIXEL
Collection date2017-06-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979
Spacegroup nameP 21 21 21
Unit cell lengths67.389, 95.789, 97.453
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution55.490 - 1.720
R-factor0.16643
Rwork0.165
R-free0.20256
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5m0x
RMSD bond length0.010
RMSD bond angle1.305
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0230)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]67.3201.760
High resolution limit [Å]1.7201.720
Rmerge0.1452.147
Rpim0.1062.615
Number of reflections675544914
<I/σ(I)>9.52.5
Completeness [%]99.899.5
Redundancy54.9
CC(1/2)0.9970.552
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M MgSO4, 20% (w/v) poly(ethylene glycol) (PEG) 3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon