6GWF
Alpha-galactosidase mutant D387A from Thermotoga maritima in complex with intact cyclohexene-based carbasugar mimic of galactose with 2,4-dinitro leaving group
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2017-06-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.389, 95.789, 97.453 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.490 - 1.720 |
R-factor | 0.16643 |
Rwork | 0.165 |
R-free | 0.20256 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5m0x |
RMSD bond length | 0.010 |
RMSD bond angle | 1.305 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.320 | 1.760 |
High resolution limit [Å] | 1.720 | 1.720 |
Rmerge | 0.145 | 2.147 |
Rpim | 0.106 | 2.615 |
Number of reflections | 67554 | 4914 |
<I/σ(I)> | 9.5 | 2.5 |
Completeness [%] | 99.8 | 99.5 |
Redundancy | 5 | 4.9 |
CC(1/2) | 0.997 | 0.552 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M MgSO4, 20% (w/v) poly(ethylene glycol) (PEG) 3350 |