6GSJ
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.2399 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 209.410, 449.240, 618.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 224.620 - 2.960 |
R-factor | 0.1961 |
Rwork | 0.196 |
R-free | 0.25190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4v6g |
RMSD bond length | 0.009 |
RMSD bond angle | 1.536 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 224.620 | 224.620 | 3.040 |
High resolution limit [Å] | 2.960 | 13.240 | 2.960 |
Rmerge | 0.290 | 0.041 | 4.647 |
Rmeas | 0.042 | 4.705 | |
Total number of observations | 204674388 | ||
Number of reflections | 2349022 | 26255 | 174084 |
<I/σ(I)> | 29.2 | 127.93 | 1.03 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 87.132 | 95.881 | 41.677 |
CC(1/2) | 0.999 | 0.999 | 0.248 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Tris-OAc, KSCN, PEG-20000, PEG-550mme |