Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GON

Crystal Structure Of Sea Bream Transthyretin in complex with Perfluorooctanoic acid (PFOA). Crystallized in PEG

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-09-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.976
Spacegroup nameP 21 21 21
Unit cell lengths72.408, 76.203, 107.103
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.814 - 1.650
R-factor0.1608
Rwork0.159
R-free0.19270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1sn2
RMSD bond length0.009
RMSD bond angle1.195
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.1001.680
High resolution limit [Å]1.6501.650
Rmerge0.1321.296
Number of reflections718983605
<I/σ(I)>15.22
Completeness [%]99.999.9
Redundancy13.312.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5291Purified SaTTR in 100 mM NaCl and 20 mM Tris-HCl, pH 7.5, was concentrated to 5 mg per ml. PFOA was added at 5 x molar excess to the protein. The reservoir contained 18% PEG 8K, 0.1M Na Cacodylate pH 6.5, 0.2M CaAc. Drop size 3 plus 3 microliter

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon