6GKL
Translation initiation factor 4E in complex with beta-phosphorothioate trinucleotide mRNA 5' cap diastereomer 2 (m7GppSpApG D2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 |
Unit cell lengths | 38.170, 38.180, 147.020 |
Unit cell angles | 88.80, 84.67, 76.13 |
Refinement procedure
Resolution | 48.795 - 2.200 |
R-factor | 0.2195 |
Rwork | 0.218 |
R-free | 0.25730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5m7x |
RMSD bond length | 0.006 |
RMSD bond angle | 0.951 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.800 | 2.260 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.124 | 0.415 |
Rmeas | 0.145 | 0.555 |
Number of reflections | 39200 | 2365 |
<I/σ(I)> | 6.35 | 1.85 |
Completeness [%] | 96.1 | 75.5 |
Redundancy | 3.478 | 1.918 |
CC(1/2) | 0.991 | 0.654 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 291 | 16% PEG 10000, 0.1M TrisHCl pH 8.0, 0.2M CH3COONH4 |