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6GBG

Helicobacter pylori adhesin HopQ type I bound to the N-terminal domain of human CEACAM1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.98
Spacegroup nameP 32 2 1
Unit cell lengths94.430, 94.430, 119.700
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution67.520 - 2.800
R-factor0.20471
Rwork0.201
R-free0.26328
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5lp2
RMSD bond length0.012
RMSD bond angle1.457
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]67.5202.850
High resolution limit [Å]2.8002.800
Rmerge0.147
Rpim0.0470.538
Number of reflections15692760
<I/σ(I)>13.61.6
Completeness [%]100.099.6
Redundancy10.510.7
CC(1/2)0.9980.628
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5293Condition B3 of the Morpheus HT-96 screen (Molecular Dimensions)(0.09 M Halogens mix (0.3M Sodium fluoride; 0.3M Sodium bromide; 0.3M Sodium iodide), 0.1 M Buffer System 1 (1.0M Imidazole; MES monohydrate (acid); pH 6.5), 50 % v/v Precipitant Mix 3 (40% v/v Glycerol; 20% w/v PEG 4000)

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PDB entries from 2024-05-15

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