6G2X
Crystal structure of the p97 D2 domain in a helical split-washer conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-03 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.92 |
Spacegroup name | P 61 |
Unit cell lengths | 93.282, 93.282, 65.997 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.530 - 2.078 |
R-factor | 0.2067 |
Rwork | 0.204 |
R-free | 0.24550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ftj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.003 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.530 | 2.153 |
High resolution limit [Å] | 2.078 | 2.078 |
Number of reflections | 19706 | |
<I/σ(I)> | 17.74 | |
Completeness [%] | 99.6 | |
Redundancy | 10.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.08M L-Na-Glutamate; 0.08M Alanine (racemic); 0.08M Glycine; 0.08M Lysine HCl (racemic); 0.08M Serine (racemic), 0.08M Tris, 0.08M BICINE, 10% v/v MPD; 10% PEG 1000; 10% w/v PEG 3350 at pH 8.5 |