6FZV
Crystal structure of the metalloproteinase enhancer PCPE-1 bound to the procollagen C propeptide trimer (short)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9282 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.090, 144.120, 158.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 79.370 - 2.700 |
R-factor | 0.2275 |
Rwork | 0.226 |
R-free | 0.25800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ae2 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.737 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 79.400 | 2.770 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.087 | 1.940 |
Number of reflections | 56733 | |
<I/σ(I)> | 17.1 | 1.2 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 13.1 | 13.7 |
CC(1/2) | 0.998 | 0.743 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 20 mg/ml protein in 20 mM HEPES pH 7.5, 180 mM NaCl, 2.5 mM calcium chloride; 0.2 M potassium citrate, 16% PEG3350 |