6FXQ
Structure of coproheme decarboxylase from Listeria monocytogenes during turnover
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 77.687, 129.369, 77.916 |
Unit cell angles | 90.00, 105.52, 90.00 |
Refinement procedure
Resolution | 49.004 - 1.690 |
R-factor | 0.1789 |
Rwork | 0.178 |
R-free | 0.21440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wws |
RMSD bond length | 0.014 |
RMSD bond angle | 1.238 |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2645) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.004 | 1.750 |
High resolution limit [Å] | 1.690 | 1.690 |
Rmerge | 0.189 | 1.748 |
Rmeas | 0.231 | 2.141 |
Rpim | 0.131 | 1.223 |
Number of reflections | 162948 | |
<I/σ(I)> | 2.93 | |
Completeness [%] | 98.0 | |
Redundancy | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 295 | 0.1 M bicine pH 9.0 10 % (w/v) PEG6000 |