6FKK
Drosophila Semaphorin 1b, extracellular domains 1-2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 163.256, 163.256, 140.403 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 81.628 - 2.780 |
R-factor | 0.2082 |
Rwork | 0.206 |
R-free | 0.24750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3oky |
RMSD bond length | 0.003 |
RMSD bond angle | 0.619 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13rc2_2986: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.628 | 2.880 |
High resolution limit [Å] | 2.780 | 2.780 |
Rmerge | 0.117 | 1.641 |
Number of reflections | 27778 | |
<I/σ(I)> | 10.93 | |
Completeness [%] | 96.7 | |
Redundancy | 11.7 | |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M trisodium citrate and 20% (w/v) PEG 3350 |