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6ECE

Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a dodecadepsipeptide, space group H3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-15
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s).9794
Spacegroup nameH 3
Unit cell lengths77.571, 77.571, 235.151
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution64.590 - 2.000
R-factor0.2109
Rwork0.209
R-free0.24280
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ecb
RMSD bond length0.003
RMSD bond angle0.527
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]64.5902.050
High resolution limit [Å]2.0002.000
Rmerge0.079
Rmeas0.088
Rpim0.053
Number of reflections356852682
<I/σ(I)>9.8
Completeness [%]100.0
Redundancy5
CC(1/2)0.9980.382
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82951.3 M DL-malic acid, pH 8.1, 25 mM HEPES, pH 8.0, 100 mM sodium chloride, 0.2 mM TCEP

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PDB entries from 2024-05-15

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